http://www.blast2go.org/ 2010-07-30T13:45:49+02:00 http://www.blast2go.org/ http://www.blast2go.org/lib/images/favicon.ico text/html 2010-07-30T13:38:33+02:00 sgoetz http://www.blast2go.org/newfeatures <pre> @@ -1,8 +1,11 @@ ====== Vote for new features ====== With this new section we would like to invite you to directly contribute to the future developments of Blast2GO. Here you can propose and vote functionalities which will be considered in future developments of Blast2GO. Your suggestions and opinions will help us to prioritize the software development process based on the concepts of a [[http://en.wikipedia.org/wiki/Feature_Driven_Development|Feature Driven Development]]. If you want to suggest a new feature which you think could be useful for you and the other Blast2GO users please go to **[[http://blast2go.uservoice.com|blast2go.uservoice.com]]** and directly add your idea to this list. After some time we can see on this page if other user agree and would like to see your idea implemented in Blast2GO. + + Thank you very much for your contribution, feedback and suggestions!! + &lt;html&gt;&lt;!-- [[http://blast2go.uservoice.com|{{:uservoice.gif|}}]] [[https://blast2go.uservoice.com/forums/66021-general/activity.atom|]] **Latest suggestions and feedbacks - click to VOTE NOW...** </pre> text/html 2010-07-13T17:55:47+02:00 sgoetz http://www.blast2go.org/localgodb <pre> @@ -1,7 +1,7 @@ ===== Local Blast2GO Database Installation ===== * Version 3 - 01.07.2009 - * **Download:** {{local_b2g_db_tutorial_0709.zip|ZIP}} + * **Download:** {{:local_b2g_db_tutorial_0809.tar.gz|tar.gz}}, {{:local_b2g_db_tutorial_0809.zip|zip}} ==== Introduction ==== This page describes how to create a local installation of the B2G MySQL database and is intended for users with some basic knowledge in MySQL databases and general server administration tasks. If you are not able to follow the steps given here, we recommend you to ask for some help from your system administrator. </pre> text/html 2010-07-13T17:19:43+02:00 sgoetz http://www.blast2go.org/downloads <pre> @@ -3,7 +3,7 @@ * Run Blast2GO by Java Web Start **([[start_blast2go|here]])** - * Documentation and Quick-Start tutorial for an easy start-up with Blast2GO: {{:b2g_tutorial_23062009.pdf|PDF}} - * Installation manual on how to set up a local Blast2GO database: [[localgodb|here]] and {{local_b2g_db_tutorial_0709.zip|ZIP}} + * Documentation and Quick-Start tutorial for an easy start-up with Blast2GO: {{:b2g_tutorial_23062009.pdf|PDF}}\\ + * Installation manual on how to set up a local Blast2GO database: **[[localgodb|here]]**\\ * Install a local www-BLAST server: [[wwwblast|click here]] * Mini-Tutorial on how to prepare and blast locally a GO fasta database for further import into Blast2GO: [[tut| here]] * B2G4PIPE - A version for B2G annotation without FrontEnd (GUI) for Pipeline Integration * Version 2.3.4: {{:b2gpipe234.zip|WIN}} and {{:b2gpipe234.tar.gz|LINUX}} @@ -12,9 +12,10 @@ \\ \\ \\ + ==== Script provided by Blast2GO users for Blast2GO users ==== These scripts are provided as-is. Please contact the respective authors for more information/feedback. * split and translate big blast output (**txt** formated) into several files in **xml** format: {{:blast2xml.zip|blast2xml.zip}} Author: Laurent Marc * split big blast output (xml formated) into severals files: {{:splitxmlblast.zip|splitxmlblast.zip}} Author: Laurent Marc </pre> text/html 2010-07-13T13:41:05+02:00 sgoetz http://www.blast2go.org/sidebar <pre> @@ -18,9 +18,9 @@ [[map|{{ :map.gif | MAPS }}]] &lt;html&gt;&lt;!--[[http://bioinfo.cipf.es/toolsusage/b2g?zoom=2&amp;lat=14&amp;lon=9&amp;layers=BTF|{{:map.gif|}}]]--&gt;&lt;/html&gt; ------ \\ - [[newfeatures|{{:uservoice.gif?120|}}]] + [[ newfeatures |{{ :uservoice.gif?100 |}}]] ------ [[http://twitter.com/blast2go|{{:twitter_feed_icon.png|}}]][[http://twitter.com/statuses/user_timeline/74696035.rss|{{:rss.png|}}]] **TWITTER NEWS** {{rss&gt;http://twitter.com/statuses/user_timeline/74696035.rss 5 date 1h}} </pre> text/html 2010-07-11T00:51:42+02:00 aconesa http://www.blast2go.org/b2g_in_papers <pre> @@ -11,8 +11,11 @@ {{:donde.png|donde nos cintan}} \\ \\ **2010**\\ + + - EST analysis and annotation of transcripts derived from a trichome-specific cDNA library from Salvia fruticosa + FM Chatzopoulou, AM Makris, A Argiriou, \\ J … - Plant cell reports, 2010 - Springer - Nobuyasu Maki,John Martinson, Osamu Nishimura,Hiroshi Tarui, Jaroslaw Meller, Panagiotis A. Tsonis and Kiyokazu Agata \\ Expression profiles during dedifferentiation in newt lens regeneration revealed by expressed sequence tags \\ Mol Vis. 2010; 16: 72–78. - Marijke De Wit, Dorien Keil, Karlijn van der Ven, Stefaan Vandamme, Erwin Witters and Wim De Coen \\ An integrated transcriptomic and proteomic approach characterizing estrogenic and metabolic effects of 17 [alpha]-ethinylestradiol in zebrafish (Danio rerio) \\ General and Comparative Endocrinology, Volume 167, Issue 2, 1 June 2010, Pages 190-201 - M.S. Vinod, H.M. Sankararamasubramanian, R. Priyanka, G. Ganesan and Ajay Parid \\ Gene expression analysis of volatile-rich male flowers of dioecious Pandanus fascicularis using expressed sequence tags. \\ Journal of Plant Physiology,Volume 167, Issue 11, 15 July 2010, Pages 914-919 - Medina, I., Carbonell, J, et al. \\ Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling \\ Nucleic Acids Research 2010 38(Web Server issue):W210-W213; doi:10.1093/nar/gkq388 </pre>